In fact,both I will be missing you and I will miss you are correct!
Have you heard of a lovely song called I will be loving you?
They use the same tense.
Let us start with I will be missing you first.
I will be missing you. = Future continous(progressive) tense
My teacher has told me before, if someone is so sure of something,then he can use this tense.
For example, I will be having dinner with my uncle at 8 P.M this evening.
In this sentence, we use I will be having dinner instead of I will have dinner because everything has been confirmed.
Like all future tenses, the Future Continuous cannot be used in clauses beginning with time expressions such as: when, while, before, after, by the time, as soon as, if, unless, etc. Instead of Future Continuous, Present Continuous is used.
For Examples:
It is incorrect to say While I am going to be finishing my homework, she is going to make dinner.
Actually, we should say While I am finishing my homework, she is going to make dinner.
For more details, please visit
http://www.englishpage.com/verbpage/futurecontinuous.html
About I will miss you, it belongs to simple future tense. It is a tense which doesn't show confirmation!
For example:
I will move to China.
I will help you.
I will call her.
If we change these three sentences to the future continous(progressive) tense, things will turn out to be the opposite.
To conclude, we use I will miss you when you are still not very sure. If you are so sure of it , you can say I will be missing you.