Silicon(IV) oxide is also named as silicon dioxide. It has giant covalent structure, in which a huge number of Si atoms and a huge number of O atoms are joined together by strong covalent bonds to form a network.
It is true that each Si atom is covalently bonded to 4 O atoms, but don’t miss that each O atom is covalently bonded to 2 Si atoms.
Since it is a network structure, there are no molecules. Therefore, it is represented by empirical formula. Since the mole ratio of Si atom to O atom in the network structure is 1 to 2, its empirical formula is SiO2.